Updated: Fri Jan 9 18:09:32 2015
| Sample | Total.DMR | Hyper.DMR | Hypo.DMR |
|---|---|---|---|
| Cortex-HuFNSC02_Cortex-HuFNSC04 | 1283 | 179 | 1104 |
| GE-HuFNSC02_GE-HuFNSC04 | 3002 | 722 | 2280 |
| proximal.DMRs | unique.genes | DE.DMRs | unique.DE.genes | same.direction | |
|---|---|---|---|---|---|
| Cortex04.UMRs | 7 | 7 | 0 | 0 | 0 |
| Cortex02.UMRs | 215 | 215 | 24 | 19 | 21 |
| GE04.UMRs | 37 | 36 | 6 | 5 | 3 |
| GE02.UMRs | 402 | 402 | 64 | 57 | 49 |
| id | name | description |
|---|---|---|
| ENSG00000189334 | S100A14 | S100_calcium_binding_protein_A14_[Source:HGNC_Symbol;Acc:18901] |
| ENSG00000237693 | IRGM | immunity-related_GTPase_family,M[Source:HGNC_Symbol;Acc:29597] |
| ENSG00000124564 | SLC17A3 | solute_carrier_family_17_(sodium_phosphate),member3_[Source:HGNC_Symbol;Acc:10931] |
| id | name | description | DM | DE |
|---|---|---|---|---|
| ENSG00000134954 | ETS1 | v-ets_erythroblastosis_virus_E26_oncogene_homolog_1_(avian)_[Source:HGNC_Symbol;Acc:3488] | hyper | UP |
| ENSG00000136352 | NKX2-1 | NK2_homeobox_1_[Source:HGNC_Symbol;Acc:11825] | hyper | UP |
| ENSG00000165588 | OTX2 | orthodenticle_homeobox_2_[Source:HGNC_Symbol;Acc:8522] | hyper | UP |
| ENSG00000231421 | hyper | DN | ||
| ENSG00000155760 | FZD7 | frizzled_family_receptor_7_[Source:HGNC_Symbol;Acc:4045] | hyper | DN |
| id | name | description | DM | DE |
|---|---|---|---|---|
| ENSG00000255737 | NA | HCG2014417,isoformCRA_aUncharacterized_proteincDNA_FLJ59598_[Source:UniProtKB/TrEMBL;Acc:B7Z718] | hypo | UP |
| ENSG00000167178 | ISLR2 | immunoglobulin_superfamily_containing_leucine-rich_repeat_2_[Source:HGNC_Symbol;Acc:29286] | hypo | UP |
| ENSG00000161999 | JMJD8 | jumonji_domain_containing_8_[Source:HGNC_Symbol;Acc:14148] | hypo | UP |
| ENSG00000051523 | CYBA | cytochrome_b-245,alphapolypeptide_[Source:HGNC_Symbol;Acc:2577] | hypo | UP |
| ENSG00000169515 | CCDC8 | coiled-coil_domain_containing_8_[Source:HGNC_Symbol;Acc:25367] | hypo | UP |
| ENSG00000205927 | OLIG2 | oligodendrocyte_lineage_transcription_factor_2_[Source:HGNC_Symbol;Acc:9398] | hypo | UP |
| ENSG00000189060 | H1F0 | H1_histone_family,member0_[Source:HGNC_Symbol;Acc:4714] | hypo | UP |
| ENSG00000146904 | EPHA1 | EPH_receptor_A1_[Source:HGNC_Symbol;Acc:3385] | hypo | UP |
| ENSG00000165072 | MAMDC2 | MAM_domain_containing_2_[Source:HGNC_Symbol;Acc:23673] | hypo | UP |
| TF | UMR17week_Cortex | UMR13week_Cortex | Ratio_Cortex | UMR17week_GE | UMR13week_GE | Ratio_GE |
|---|---|---|---|---|---|---|
| MAZ | 133 | 5 | 26.6000 | 319 | 12 | 26.5833 |
| GTF2F1 | 28 | 1 | 28.0000 | 103 | 2 | 51.5000 |
| ZBTB7A | 97 | 3 | 32.3333 | 201 | 3 | 67.0000 |
| HMGN3 | 66 | 2 | 33.0000 | 131 | 4 | 32.7500 |
| NRF1 | 34 | 1 | 34.0000 | 64 | 1 | 64.0000 |
| MXI1 | 112 | 3 | 37.3333 | 262 | 7 | 37.4286 |
| E2F4 | 50 | 1 | 50.0000 | 110 | 1 | 110.0000 |
| CCNT2 | 87 | 1 | 87.0000 | 148 | 4 | 37.0000 |
| E2F6 | 140 | 1 | 140.0000 | 263 | 8 | 32.8750 |
| UP | DN | DE | GW | type | Sample | |
|---|---|---|---|---|---|---|
| 1 | 284 | 281 | 565 | GW17-GW15 | cortex | GW17-GW15.1_cortex |
| 2 | 365 | 165 | 530 | GW17-GW13 | cortex | GW17-GW13.1_cortex |
| 3 | 398 | 283 | 681 | GW17-GW15 | cortex | GW17-GW15.2_cortex |
| 4 | 497 | 225 | 722 | GW17-GW13 | cortex | GW17-GW13.2_cortex |
| 5 | 459 | 183 | 642 | GW15-GW13 | cortex | GW15-GW13_cortex |
| 6 | 587 | 274 | 861 | GW17-GW15 | GE | GW17-GW15.1_GE |
| 7 | 645 | 238 | 883 | GW17-GW13 | GE | GW17-GW13.1_GE |
| 8 | 609 | 312 | 921 | GW17-GW15 | GE | GW17-GW15.2_GE |
| 9 | 610 | 259 | 869 | GW17-GW13 | GE | GW17-GW13.2_GE |
| 10 | 313 | 232 | 545 | GW15-GW13 | GE | GW15-GW13_GE |
| 11 | 74 | 75 | 173 | GW17-GW15 | shared | GW17-GW15.1_shared |
| 12 | 239 | 65 | 311 | GW17-GW13 | shared | GW17-GW13.1_shared |
| 13 | 78 | 75 | 180 | GW17-GW15 | shared | GW17-GW15.2_shared |
| 14 | 282 | 84 | 372 | GW17-GW13 | shared | GW17-GW13.2_shared |
| 15 | 79 | 74 | 166 | GW15-GW13 | shared | GW15-GW13_shared |
| Sample | DE_genes | DE_exons | with_expressed_genes | isoform_exons | exclude_DE_genes | isoform_genes | GW |
|---|---|---|---|---|---|---|---|
| Cortex-HuFNSC01_Cortex-HuFNSC03 | 565 | 28637 | 16045 | 8044 | 7772 | 2490 | 17 vs 15 |
| Cortex-HuFNSC01_Cortex-HuFNSC04 | 530 | 27428 | 13200 | 6365 | 6134 | 2167 | 17 vs 13 |
| Cortex-HuFNSC02_Cortex-HuFNSC03 | 681 | 28963 | 16765 | 7961 | 7630 | 2425 | 17 vs 15 |
| Cortex-HuFNSC02_Cortex-HuFNSC04 | 722 | 29416 | 13894 | 6351 | 6011 | 2105 | 17 vs 13 |
| Cortex-HuFNSC03_Cortex-HuFNSC04 | 642 | 26826 | 12185 | 5818 | 5479 | 1994 | 15 vs 13 |
| GE-HuFNSC01_GE-HuFNSC03 | 861 | 31361 | 14725 | 5880 | 5458 | 2041 | 17 vs 15 |
| GE-HuFNSC01_GE-HuFNSC04 | 883 | 34359 | 15889 | 6401 | 5996 | 2049 | 17 vs 13 |
| GE-HuFNSC02_GE-HuFNSC03 | 921 | 32827 | 15557 | 5773 | 5306 | 1965 | 17 vs 15 |
| GE-HuFNSC02_GE-HuFNSC04 | 869 | 34699 | 16012 | 6113 | 5711 | 1986 | 17 vs 13 |
| GE-HuFNSC03_GE-HuFNSC04 | 545 | 24752 | 12223 | 4582 | 4422 | 1454 | 15 vs 13 |